CLI Commands Reference

Command Overview

The InitRepo CLI provides comprehensive commands for code analysis, documentation generation, and safe code modifications. All commands support both human-readable and JSON output formats for seamless AI integration.

Command Categories

Analysis Commands

Deep codebase analysis including structure, complexity, and quality metrics

Generation Commands

Automated documentation and structure generation from code analysis

Modification Commands

Safe code modifications using AST-based operations

Utility Commands

Project scaffolding, configuration, and task management

Core Analysis Commands

`analyze`

Performs comprehensive codebase analysis and creates a .initrepo/ directory with results.

# Basic analysis
initrepo-cli analyze

# Analysis with JSON output
initrepo-cli analyze --format=json

# Include specific patterns
initrepo-cli analyze --include "src/**/*.js"

# Exclude patterns
initrepo-cli analyze --exclude "**/*.test.js"

Options:

--format: Output format (text, json)
--include: Include file patterns
--exclude: Exclude file patterns
--max-depth: Maximum directory depth
--verbose: Detailed output

`generate-structure`

Creates visual project structure documentation.

Tree Format
JSON Format

# Human-readable tree view
initrepo-cli generate-structure --format=tree

# Limited depth
initrepo-cli generate-structure --format=tree --max-depth=3

# Save to file
initrepo-cli generate-structure --format=tree > project-structure.txt

# Machine-readable format
initrepo-cli generate-structure --format=json

# Save to file for AI consumption
initrepo-cli generate-structure --format=json > structure.json

# Pretty printed
initrepo-cli generate-structure --format=json | jq '.'

Options:

--format: tree, json
--max-depth: Maximum directory depth (default: 5)
--output: Output file path
--include-hidden: Include hidden files and directories

`analyze-complexity`

Analyzes code complexity and identifies potential issues.

# Basic complexity analysis
initrepo-cli analyze-complexity

# Set complexity threshold
initrepo-cli analyze-complexity --threshold=15

# With recommendations
initrepo-cli analyze-complexity --with-recommendations

# JSON output for AI processing
initrepo-cli analyze-complexity --format=json

Options:

--threshold: Complexity threshold (default: 10)
--with-recommendations: Include improvement suggestions
--format: text, json
--include: File patterns to analyze
--exclude: File patterns to exclude

`analyze-imports`

Analyzes import statements and identifies issues.

# Full import analysis
initrepo-cli analyze-imports

# Find unused imports only
initrepo-cli analyze-imports --unused-only

# Check for circular dependencies
initrepo-cli analyze-imports --circular-only

# JSON format for automation
initrepo-cli analyze-imports --format=json

Options:

--unused-only: Show only unused imports
--circular-only: Show only circular dependencies
--format: text, json
--fix: Automatically fix issues (use with caution)

`validate-structure`

Validates project structure against best practices.

# Basic validation
initrepo-cli validate-structure

# Strict validation
initrepo-cli validate-structure --strict

# JSON output with score
initrepo-cli validate-structure --format=json

Output includes:

Structure score (0-100)
Best practice violations
Improvement recommendations
Compliance status

Documentation Commands

`deps`

Analyzes and documents project dependencies.

Basic Usage

# All dependencies
initrepo-cli deps

# Runtime dependencies only
initrepo-cli deps --type=runtime

# Development dependencies only
initrepo-cli deps --type=dev

Output Formats

# Markdown table format
initrepo-cli deps --format=markdown

# JSON format
initrepo-cli deps --format=json

# Export to file
initrepo-cli deps --format=json > dependencies.json

`find-symbol`

Searches for symbols (functions, classes, variables) in the codebase.

# Find all occurrences of a symbol
initrepo-cli find-symbol "getUserById"

# Find by symbol type
initrepo-cli find-symbol "User" --type=class

# Exact match only
initrepo-cli find-symbol "authenticate" --exact

# JSON output
initrepo-cli find-symbol "validateInput" --format=json

Options:

--type: Symbol type (function, class, variable, interface)
--exact: Exact matching only
--case-sensitive: Case-sensitive search
--format: text, json

`get-code`

Extracts code blocks with context.

# Get function with minimal context
initrepo-cli get-code "processPayment"

# Get with full context
initrepo-cli get-code "UserService" --context=full

# JSON format for AI processing
initrepo-cli get-code "validateUser" --context=minimal --format=json

Context levels:

minimal: Function/class only
dependencies: Include immediate dependencies
full: Include complete context and relationships

Safe Modification Commands

`safe-rename`

Safely renames symbols throughout the codebase using AST analysis.

Preview Changes

# Preview rename operation
initrepo-cli safe-rename oldFunctionName newFunctionName --dry-run

Apply Rename

# Apply the rename
initrepo-cli safe-rename oldFunctionName newFunctionName

# With backup
initrepo-cli safe-rename oldFunctionName newFunctionName --backup

Verify Changes

# Find references to new name
initrepo-cli find-references newFunctionName

Options:

--dry-run: Preview changes without applying
--backup: Create backup before changes
--scope: Limit scope (file, directory, project)
--format: text, json

`manage-imports`

Manages import statements automatically.

# Remove unused imports
initrepo-cli manage-imports --remove-unused

# Organize imports
initrepo-cli manage-imports --organize

# Both operations
initrepo-cli manage-imports --remove-unused --organize

# Preview changes
initrepo-cli manage-imports --remove-unused --dry-run

Options:

--remove-unused: Remove unused import statements
--organize: Sort and group imports
--dry-run: Preview changes
--backup: Create backup before changes

Utility Commands

`scaffold`

Creates new projects with best practices and templates.

Web Projects
Backend & APIs
Libraries & Tools

# React application
initrepo-cli scaffold react my-app

# Next.js application
initrepo-cli scaffold nextjs web-app

# Node.js API
initrepo-cli scaffold node-api api-server

# Vue.js application
initrepo-cli scaffold vue my-vue-app

# Angular application
initrepo-cli scaffold angular admin-panel

# Express.js API
initrepo-cli scaffold express-api backend

# FastAPI (Python)
initrepo-cli scaffold fastapi my-api

# Django application
initrepo-cli scaffold django web-app

# TypeScript library
initrepo-cli scaffold typescript-lib my-lib

# Python automation
initrepo-cli scaffold python-automation script

# React component library
initrepo-cli scaffold react-components ui-lib

Options:

Project templates are pre-configured with best practices
Includes package.json, configuration files, and basic project structure
Ready for immediate development and deployment

`suggest-refactor`

Provides AI-powered refactoring suggestions.

# All suggestions
initrepo-cli suggest-refactor

# High priority only
initrepo-cli suggest-refactor --min-severity=high

# Specific categories
initrepo-cli suggest-refactor --category=performance

# JSON format
initrepo-cli suggest-refactor --format=json

Categories:

performance: Performance improvements
maintainability: Code maintainability
security: Security enhancements
style: Code style consistency

`find-references`

Finds all references to a symbol.

# Find all references
initrepo-cli find-references "calculateTotal"

# Include definitions
initrepo-cli find-references "User" --include-definitions

# JSON output
initrepo-cli find-references "validateInput" --format=json

Global Options

All commands support these global options:

# Common options across all commands
initrepo-cli <command> [options]
  --help          Show help for command
  --version       Show CLI version
  --format        Output format: text, json
  --output        Output to file
  --verbose       Verbose output
  --quiet         Suppress non-error output
  --dry-run       Preview changes without applying (where applicable)

Advanced Usage Examples

Automated Quality Analysis

#!/bin/bash
# quality-check.sh - Comprehensive quality assessment

echo "🔍 Running automated quality checks..."

# Structure validation
initrepo-cli validate-structure --format=json > validation.json

# Complexity analysis
initrepo-cli analyze-complexity --threshold=15 --format=json > complexity.json

# Import analysis
initrepo-cli analyze-imports --format=json > imports.json

# Generate report
echo "✅ Quality check complete. Check JSON files for results."

CI/CD Integration

# GitHub Actions workflow
- name: InitRepo Analysis
  run: |
    initrepo-cli validate-structure --format=json > structure.json
    initrepo-cli analyze-complexity --threshold=10 --format=json > complexity.json
    
    # Quality gates
    score=$(jq '.data.score' structure.json)
    if [ "$score" -lt 80 ]; then
      echo "Structure score too low: $score/100"
      exit 1
    fi

AI Assistant Integration

# Generate AI-ready context
initrepo-cli analyze --format=json > project-context.json
initrepo-cli get-code "UserService" --context=full --format=json >> ai-context.json

# Use with AI coding assistants
cat ai-context.json | ai-assistant "Analyze this code structure"

Command Aliases

Common command aliases for faster usage:

# Add to your shell profile (.bashrc, .zshrc)
alias ira="initrepo-cli analyze"
alias irgs="initrepo-cli generate-structure"
alias irac="initrepo-cli analyze-complexity"
alias irai="initrepo-cli analyze-imports"
alias irsr="initrepo-cli safe-rename"

Best Practices

For Development Workflow

Run analysis regularly: initrepo-cli analyze should be part of your development routine
Use JSON output: Enable better integration with scripts and AI assistants
Preview before modifying: Always use --dry-run for modification commands
Set appropriate thresholds: Adjust complexity thresholds based on your project needs

For Team Collaboration

Standardize configurations: Use consistent .initrepoignore files across team
Integrate with CI/CD: Automate quality checks in your pipelines
Share JSON outputs: Use structured outputs for team analysis and reporting
Document decisions: Use refactoring suggestions to document architectural decisions

Getting Started

Plans & Pricing

Security & Compliance

MCP Server

CLI Tool

​Command Overview

​Command Categories

Analysis Commands

Generation Commands

Modification Commands

Utility Commands

​Core Analysis Commands

​analyze

​generate-structure

​analyze-complexity

​analyze-imports

​validate-structure

​Documentation Commands

​deps

​find-symbol

​get-code

​Safe Modification Commands

​safe-rename

​manage-imports

​Utility Commands

​scaffold

​suggest-refactor

​find-references

​Global Options

​Advanced Usage Examples

​Automated Quality Analysis

​CI/CD Integration

​AI Assistant Integration

​Command Aliases

​Best Practices

​For Development Workflow

​For Team Collaboration

​Next Steps

Advanced Features

Configuration Guide

Command Overview

Command Categories

Core Analysis Commands

`analyze`

`generate-structure`

`analyze-complexity`

`analyze-imports`

`validate-structure`

Documentation Commands

`deps`

`find-symbol`

`get-code`

Safe Modification Commands

`safe-rename`

`manage-imports`

Utility Commands

`scaffold`

`suggest-refactor`

`find-references`

Global Options

Advanced Usage Examples

Automated Quality Analysis

CI/CD Integration

AI Assistant Integration

Command Aliases

Best Practices

For Development Workflow

For Team Collaboration

Next Steps